Group software

MASH Explorer

The Ge lab was awarded NIH R01GM125085-01A1 for MASH Explorer software development. We are currently migrating our MASH software information to a new website, supported by the grant. Click HERE to view the new website. MASH Explorer App is a universal, comprehensive, and user-friendly software desktop environment for top-down proteomics. It can process top-down high-resolution MS and LC-MS/MS data from various vendor formats (Thermo .raw, Bruker .baf and .ascii, Waters .raw directory, and universal data file formats .mgf and .mzXML) with multiple spectral deconvolution and database searching algorithms. Within the software, graphical tools are implemented to allow users to manually explore the peak picking, deconvolution, and search results, to investigate overlooked fragment ions, and to combine LC-MS/MS spectra.

Visit our new website for additional information such as new user tutorial and user manual. Click HERE.

MASH Explorer USER AGREEMENT

Please cite the following publication if the software is used: Cai, W.; Guner, H.; Gregorich, Z.R.; Chen, A.J.; Ayaz - Guner, S.; Peng, Y.; Valeja, S.G.; Liu, X.; Ge, Y.MASH Suite Pro: A Comprehensive Software Tool for Top - down Proteomics, Mol.Cell.Proteomics Epub ahead of print.mcp.O115.054387.
The development of MASH Explorer was supported by the National Institutes of Health, grant number R01GM125085. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.

The End User Licensing Agreement can be found here.

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You can find our archive software, MASH Suite and MASH Suite Pro, HERE.